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  • Proksee - Genome Analysis
    Proksee is an expert system for genome assembly, annotation and visualization, featuring interactive circular and linear genome maps To begin using Proksee, provide a complete genome sequence, sequencing reads or a CGView Proksee map JSON file
  • Proksee - Tutorials
    Tutorial: Getting Started with Proksee Overview This tutorial will go over the following: Making a new project with an unannotated genome Running the Prokka tool to find annotations for the genome Adding the annotations as features to the map Saving changes to the map Downloading results
  • Proksee - Help
    Proksee makes it easy to go from sequence to publication-quality maps Proksee projects can be started with a genome sequence, sequencing reads or a CGView js JSON file Once a project has been started, you will be taken to the Project Page where you can begin to annotate your genome and edit your map
  • Proksee - Tools
    Proksee Tools Below is the current list of tools available to Proksee projects To use a tool, first start a project on the New Project page and then start your tool of interest from the Tool Panel in the Sidebar
  • Proksee - News
    Proksee now displays a build date to help users cite the platform in publications Because Proksee is an evergreen web service, build dates are used instead of traditional version numbers A build represents a stable snapshot corresponding to major features, tool updates, or significant bug fixes that may affect results
  • Proksee - About
    Proksee works on all modern web browsers (e g Chrome, Firefox, Safari, Edge) For a full list of browsers and operating systems we have tested, see the Proksee Browser Compatibility page
  • Proksee - Tools: Prokka
    -------------------------------------------------------------------------------- Prokan Tool Changelog: Prokka -------------------------------------------------------------------------------- v1 2 0 - 2024-11-20 - Use docker instead of conda v1 1 1 - 2023-10-19 - Add genetic code numbers to select list v1 1 0 - 2022-11-24 - Add ReportCard v1 0
  • Proksee: in-depth characterization and visualization of bacterial genomes
    Proksee accepts three types of input: pre-assembled contigs, Illumina sequencing reads, and JSON archive files (down-loaded from previous Proksee sessions) The contigs can be provided as a GenBank, EMBL, or FASTA file, or as an NCBI accession Up to 10 million bases of input in the form of one or more sequences is supported for these formats
  • Proksee - Tutorials
    New Project My Projects About 2
  • Proksee - Login
    User accounts on Proksee are completely optional One of the advantages of having an account are that your user projects will be easily available on other devices and browsers In addition, your user projects will not be deleted after 7 days All user accounts come with 500 MB of storage Sign up here





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