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  • BEAST Software - Bayesian Evolutionary Analysis Sampling Trees | BEAST . . .
    What is BEAST? BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models
  • First Tutorial | BEAST Documentation
    Running BEAST for the first time This tutorial will guide you through running BEAST and some of its accessory programs to do a simple phylogenetic analysis If you haven’t already, download and install BEAST following these instructions
  • BEAGLE | BEAST Documentation
    Using BEAGLE with BEAST BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics package It can make use of highly-parallel processors such as those in graphics processing units (GPUs) found in many PCs The current version of BEAGLE will only work with BEAST v1 6 or later Downloading and installing BEAGLE
  • Tracer | BEAST Documentation
    Tracer (now at version 1 7 2) is a software package for visualising and analysing the MCMC trace files generated through Bayesian phylogenetic inference Tracer provides kernel density estimation, multivariate visualisation, demographic trajectory reconstruction, conditional posterior distribution summary and more Tracer v1 7 2 can read output files from MrBayes, BEAST, BEAST2, RevBayes
  • TreeAnnotator | BEAST Documentation
    TreeAnnotator is a program to summarize the information from a sample of trees produced by BEAST onto a single “target” tree The summary information includes the posterior probabilities of the nodes in the target tree, the posterior estimates and HPD limits of the node heights and (in the case of a relaxed molecular clock model) the rates
  • Downloading and installing BEAST on Windows | BEAST Documentation
    Downloading and installing BEAST on Windows BEAST is a software package for phylogenetic analysis with an emphasis on time-scaled trees
  • Downloading and installing BEAST on UNIX Linux
    Downloading and installing BEAST on UNIX Linux BEAST is a software package for phylogenetic analysis with an emphasis on time-scaled trees
  • BEAUti The BEAST | BEAST Documentation
    The BEAUti The BEAST software packageBayesian Evolutionary Analysis Utility (BEAUti) BEAUti is a graphical user-interface (GUI) application for generating BEAST XML files It is distributed in the same package as BEAST To download it, go to the BEAST download page
  • FigTree | BEAST Documentation
    FigTree is a program for viewing trees, including summary information produced by TreeAnnotator, and producing publication quality figures
  • Phylogeographic diffusion in discrete space | BEAST Documentation
    Click Copy and open the link in a new browser tab window To summarise Bayes factor support for rates, select the Discrete Rates tab Load the output BEAST file containing the spatial rates and rate indicators (batRABV state rates log) and the coordinates in the locationStates txt file, and set an appropriate burn-in level Click, Start analysis





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